NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209886_1055978

Scaffold Ga0209886_1055978


Overview

Basic Information
Taxon OID3300027273 Open in IMG/M
Scaffold IDGa0209886_1055978 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025770Metagenome / Metatranscriptome200Y
F027147Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209886_10559781F027147AGGVIQRNRSARNRDIALTTLIDLLVQIIFVFTLILISADAMEGESHERSWVTPDVWKTLISIFDVDPRSHRDADAQVTEIKGKYDRVKDALLACDAKVGACDKQEGRGPGNSPCRNSAGVEMVV
Ga0209886_10559782F025770N/AGLEALADITERAVQLGTDAVTTQVQLSAQISGPLADQLRRHSEAAGALASRLQEDLRASEEAVRKVHHHLIDASRFILSKVEYRG
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