NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209846_1000723

Scaffold Ga0209846_1000723


Overview

Basic Information
Taxon OID3300027277 Open in IMG/M
Scaffold IDGa0209846_1000723 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5598
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045955Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209846_10007236F045955AGGAMESNNTGGFRRKENLSELRYWTDSVLLVFLIVTAFPAHAFNHYTDHQLDALAVRVGRIYWIVAVKNQTPAFLSSPTAKAASFRPQANESFEITELVGRKDKNPYYKVKFDSGKEAFIQPEIFLEELNLGIASVDPQAIEKKKAAAEEEEEKKRIEWIQAQPWSRTVKEAAIKRQVIGGMNGGEVKKILGNPIRVTKVKAQLNVAEEHWLYADGSTAVFLNGLFNRIEPRRNTEPQPRAEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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