NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208439_1022770

Scaffold Ga0208439_1022770


Overview

Basic Information
Taxon OID3300027278 Open in IMG/M
Scaffold IDGa0208439_1022770 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F010618Metagenome301N

Sequences

Protein IDFamilyRBSSequence
Ga0208439_10227701F002398AGGMIALISIFLLTALDPIKNFVSLKTYISENAKIHCKVYFINEEIPDFPRVNIIEKSKFDFFAYLDTIGIEH
Ga0208439_10227705F002406N/AMENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPAIVEELKSSSLIEPDYFEDEE
Ga0208439_10227706F010618N/AKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTYSGYICRIVLCGEIEQED

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