Scaffold Ga0208439_1022770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208439_1022770

Scaffold Ga0208439_1022770

Overview

Basic Information
Taxon OID	3300027278 Open in IMG/M
Scaffold ID	Ga0208439_1022770 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1285
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208439_10227701	F002398	AGG	MIALISIFLLTALDPIKNFVSLKTYISENAKIHCKVYFINEEIPDFPRVNIIEKSKFDFFAYLDTIGIEH
Ga0208439_10227705	F002406	N/A	MENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPAIVEELKSSSLIEPDYFEDEE
Ga0208439_10227706	F010618	N/A	KLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTYSGYICRIVLCGEIEQED

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