NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1012983

Scaffold Ga0209691_1012983


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1012983 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2423
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006183Metagenome / Metatranscriptome379Y
F024799Metagenome / Metatranscriptome204Y
F056637Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10129831F056637N/AIAVFTQTVWLSVPGAEVRVMVLLGCTMMVPVAVTFPQPPVKVTV
Ga0209691_10129832F006183AGGMVMIPSEKLSVTPGGKFSNVASVAPVVLYVIGVISVFTQTVWLSVPGAEVRVMVLSGCTMMVPVAIISPQPPIKVTV
Ga0209691_10129833F006183AGGMVMIPSEKLSVTPGGKFSNVASVAPVVLYVIGVISVFTQTVWLFVPGSEVRVMVLSGCTMMVPVAVTFPQPPIKITV
Ga0209691_10129835F024799AGGMVISPPEKLPVTPSGKLSNVASVAPVVLYVIGVIGVFTQTVWLSVPGAEVSVMG
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