NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209691_1039313

Scaffold Ga0209691_1039313


Overview

Basic Information
Taxon OID3300027279 Open in IMG/M
Scaffold IDGa0209691_1039313 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)965
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209691_10393131F002229N/AEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLVSGVGWWTVIGGRRVTATLAAIGWCWVADGCGARGYWSPALACIPGEVRALCGGCVRDDDGDDEE
Ga0209691_10393132F008135AGGAGGMRAMNDPRTERVLTEAGAGIARVLNDRQRRAVALAIEACWYIVAALPPDGGVTFGDVVWLLRWFARGFNEDVEVDDGDE
Ga0209691_10393133F002795GGAGGMATSSSLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFVRDGSGRPVIKLYVDEGVR
Ga0209691_10393134F059548AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLR
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Institute for Fundamental Biomedical Research
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