NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208970_1000072

Scaffold Ga0208970_1000072


Overview

Basic Information
Taxon OID3300027298 Open in IMG/M
Scaffold IDGa0208970_1000072 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35054
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (61.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F008915Metagenome / Metatranscriptome326Y
F015659Metagenome253Y
F026438Metagenome198N
F059875Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0208970_100007229F001839GAGMKYFEKVDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKPTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSSPNVINIGKVIK
Ga0208970_100007232F008915N/AMGFIVDNEITLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKQDEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0208970_100007233F059875N/AMKTLVLIFGVITNDGQIELVKVPDIALKNINSCEKAIETHTKWVDNPDFDNNPLPHGFYTYKNKVVMLQYCTENGVYSG
Ga0208970_100007235F026438N/AMANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAKETAQNHLDNIDDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKAKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQISLYQKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0208970_100007237F015659AGGAGMIERSLKDAIQQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPEEEKKIKPKLSIEQMANDWIDVLKKTATHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKQ

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