NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208970_1001211

Scaffold Ga0208970_1001211


Overview

Basic Information
Taxon OID3300027298 Open in IMG/M
Scaffold IDGa0208970_1001211 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7233
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055746Metagenome / Metatranscriptome138N
F066806Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0208970_100121110F066806AGGAMSMEVYEKIGENLNSIVKIKNYQVAPLYPKGKPGTNDKSVREFRLQLINKDNDTSKELIDHLKMQLRKDTSLESVAFNSISPNSSKFPSYSFTFDGLKFDIIIARGANAGEKFEVRTVKTLDNYFKTRTDNETSEVVTMMSESHAPFANAEIVGAVQRTGATKKEGIPIDKLGAIIGDIILTDNQGNPWYISLKDINGNTFSSYSGAASLFDREGNLQPNSAGATFLKTFGVDLNKVQAGFDERGSINKVRPKLAVPRANAREIEKIFNRAWGMNYFYVRRMRTGWKVFWLGKTKLDKLSQNIKIDDIRYPSTKSKQITILCSNTVEDYVIELRNSKAGEYPNDTKFKVKK
Ga0208970_100121111F055746AGGMTVRFKSFITESVGAKGLAYEKKVFDAMKSAGVTGLDVGSKPGAGYSNQGAGDIEALYNGKEFNIEIKLDKNAQMGGTSIRIDTQNKTHTLVKPDAVDDDAIPFFIEAAKKQDKALKDWVNFIRKQEPVAFHKKTPYTIPFGSVTKDAWSAAQKAGYLTKMNAVQSFDSAKTIAKAYNRKNVYYIQIGKAGLFYLGSNPLKLDIPEYKGSVNIEFRLGPSGSKARKFEGEDYRVVGAGYRCQGRLKTNIKSTYSLDNPEDVKKLFGA
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Institute for Fundamental Biomedical Research
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