NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209365_1043741

Scaffold Ga0209365_1043741


Overview

Basic Information
Taxon OID3300027318 Open in IMG/M
Scaffold IDGa0209365_1043741 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius imperfectus BELIZE.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2169
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026482Metagenome197Y
F035187Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0209365_10437411F035187GGAMVINREQDHPTRWIKEAVHIHKEGYQAMNRDEGSYPLSHAYDRLLDAIADRRIKTQKN
Ga0209365_10437412F026482GGAVDYLIWRALQQLVCRHRCFPNNEHLKEVLQTCWEQLGQDIIDCAKEEFLKRLSLTDATCGGHIEHHFD

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