NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209731_1000107

Scaffold Ga0209731_1000107


Overview

Basic Information
Taxon OID3300027326 Open in IMG/M
Scaffold IDGa0209731_1000107 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5841
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Glomerales → Glomeraceae → Rhizophagus → Rhizophagus irregularis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041096Metagenome160Y
F097007Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209731_10001077F041096AGGAMERMCGMLIPLVKSQLNPYANLWNNLILNERFNLLKYKSEFYKHIFPQEEEREWASHRVFSSSLYDKEYEFYSPSKKYILTPIELKKLKETYSAIYDLNVNQIEVINLFIQ
Ga0209731_10001078F097007N/AMFAYIRKINKYEEDNYGQIYFNRFSSFQFIEVIGIDRCVGFFKIENLFYILDREKI

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