Basic Information | |
---|---|
Taxon OID | 3300027361 Open in IMG/M |
Scaffold ID | Ga0209489_100490 Open in IMG/M |
Source Dataset Name | Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 74158 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (35.94%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | California, USA | |||||||
Coordinates | Lat. (o) | 34.0722 | Long. (o) | -118.4441 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F072021 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209489_10049056 | F072021 | N/A | MSKQMMYKQGYCNTNTSIQTNTKETSKGIEGLVLMIKSTKNSLSQMIAPAAVQENRS |
⦗Top⦘ |