NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209489_115058

Scaffold Ga0209489_115058


Overview

Basic Information
Taxon OID3300027361 Open in IMG/M
Scaffold IDGa0209489_115058 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4989
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057148Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209489_1150582F057148N/AMYTTNQLFKVEITHTQXFNMGVAIMNVANHLDVHD
Ga0209489_1150583F057148N/AMYTTNQLFKVGKTHREXFNMGVRVMNVANHLDAHD
Ga0209489_1150584F057148N/AMYMTNQLFKVGITHRQXFNMGVGVMNVANHLDVHD
Ga0209489_1150585F057148N/AMYTTNQLFKVGKTHKQXFNMSVRVMNVANHLDVHD
Ga0209489_1150586F057148N/AMYTTNELFKVGITHRQXFNMGVKTINVANHLDVHN
Ga0209489_1150587F057148N/AMYTTNQLFKVGKTHKEXFNMGVGVMNIVNHLDIHD
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