NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209700_105644

Scaffold Ga0209700_105644


Overview

Basic Information
Taxon OID3300027363 Open in IMG/M
Scaffold IDGa0209700_105644 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20738
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057148Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209700_1056447F057148N/AMYTTNQLFKVGKTHRQLFNIGVGVMNTANHLDVYD
Ga0209700_1056448F057148AGGMYTTNQLFKVGKTHRQXSNMGVGVMNVANHLDVHD

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