NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209700_111820

Scaffold Ga0209700_111820


Overview

Basic Information
Taxon OID3300027363 Open in IMG/M
Scaffold IDGa0209700_111820 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7703
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057148Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209700_1118202F057148N/AMYTTNQLFKVEITHRQXFNMGVGVMNIANHLNIHD
Ga0209700_1118203F057148N/AMYTTNQLFKVGKTYKQXFNMGVGVMNVANHLDVHD
Ga0209700_1118204F057148N/AMYTTNQLFKVGKTNKQXFNMGVGVMNVANHLDVHD
Ga0209700_1118205F057148N/AMYTTNQLIKVRKTNKQLFNMSVGVMNVANHLDVHD
Ga0209700_1118206F057148N/AMYMTNQLFNVEITHMQXFNMGVGVMNVANHLDVHD
Ga0209700_1118207F057148AGTAGMYTTNQLFKVGITHMQXFNMGIGVMDVANHLDVYN
Ga0209700_1118208F057148N/AMYITNQLFKIGKTHRQXFNMGVGVMKVANHLDVHD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.