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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027365 Open in IMG/M |
| Scaffold ID | Ga0209300_1000392 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23773 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (83.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008689 | Metagenome | 329 | Y |
| F041774 | Metagenome | 159 | N |
| F043939 | Metagenome | 155 | N |
| F053298 | Metagenome / Metatranscriptome | 141 | Y |
| F066791 | Metagenome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209300_10003921 | F041774 | N/A | MQRAYKAATKASIDELEALEGRIQERLDNGEHPSDTILWMRQRIIDNIEELGKNLKKFSIEGATITADGQLESAVLANEASVGMVEAAAGRKPAGVSLGSSWTNLPDEQLQAFVGMAGDGSPLGELFATIPQ |
| Ga0209300_100039219 | F043939 | AGTAG | MATPATDAGQAIAFLRHLFKPYSDGFIEIRPLSKVKPHANRTTYRLPHCLKGEEGQALTQHIISLAIRGYDVYVGVCPRAAPEGPGRKLGKESIEQVGAVWIDLDSKVPGSSQGLLDNCDIVIHTGNGWHGYVMLPAVANCRNTKDRTAIESKIRSWQNSIILGTDPVGNVDRILRVPGTINWKEPDNPKAVTLLKGGAMRPIHKVSLLVRHLEDARLDALLASAKQGQLGRAVPRIRHASGRITDLLDVFFLEAEEACMAFESNPAWEYRLDIVRADLPEVMEYYFGS |
| Ga0209300_100039223 | F053298 | GGAG | MRRCNECGNSVEDTDKMCTACRLAEWRHFQTLEMNKRNRQNALDANRAAYLGRKKAIKDSIKAGVITAISVLLFLALVSATRDAIRYEWETKPAMLKANGVK |
| Ga0209300_100039235 | F066791 | N/A | MANIHPLLVEFDVPEPRPQFGRLMVPLDGTKVDLTNSNNIWQDPATLTMMLAPLPVTPSWRTSYSGSYARYQKTDYTLITAAKWKQMQIRASGDYYLQSLDVTERATLTTAFSANQPVYLSLYVPGLKDTDKSIILKAGWGVGSAGSVEVWFAANGSAQVYKSGVLVGSYDRGDANIAPAVGTTASKSSRSDFISIMMIPARRRELIVATSNGTHFSHVFSDLSAGTSNTIVPAAAFSWLVPSGQATVQLAKCAFETSGYILSNVKSLRYPPPTGATFGHTYAQDSIGIGAVTSDVTLVKADGTTYTPNGVIKDVRAKVTLTGGTGTYGIYSVEAVYDAPVGSTYDGTVDVTQYIKSLSISVDEDGKASCNIGAIAGLLVEAGVEQPDVTSDRPVRIALSDGATPTPTYQDIFRGTLQPPKIEYLDRDTSYNWATYVYQGTDRSGDFDLAWLVESFPYDGYLAGNAILDLMLIAGYTDIYFSGDFPLQDLPYTTNVSKGQYSLAPDYGDTVQSYLDKIKQEYYATWITGWMPTASGYYYQWLDVNAASTASTMTLYQSIAAATTAGVTEVLRPQRVIRTLNSYYEQPECTQVTVIGQDPNTGLFIPYTQIDAAAEDADTPPATRPRNWRGRPVCYQYRDPALNTLDAVTAACLMLYSRLTTGRTMIEFDATFLVYNNSNRPVWLGDVIKLMDTDGVAVLGNYRIIAIPQIEFVQENTPGSSTLFNVRRASYRAVYVSAGT |
| Ga0209300_10003928 | F008689 | GGAG | MARFGEVIQDLMEGGSKAVLRSEWGGSVFLRYSELWNIFELHGPGGRVTQLEELSLSPGDLFANDWAVVKLDPRTGEVAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |