NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1002555

Scaffold Ga0209300_1002555


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1002555 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6669
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F006623Metagenome / Metatranscriptome368Y
F007170Metagenome / Metatranscriptome356N
F078722Metagenome116N
F097201Metagenome / Metatranscriptome104N
F101022Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209300_10025551F101022N/ALEDGTGDPTLMWVDQGPINTERYDVRTATRQAWMIKASRCASDIDAKEGTSDVKLSQLKAHCLSMAERYRPLVFA
Ga0209300_10025553F078722GGAGMSASEWTAIGIFVAGLVVSLLVYIVQFLHKMDKRNAVDSVTVKDHGHRLVKLEGDTGELKTRVTHLEANR
Ga0209300_10025554F001733GGAGGMNSISIKRLVVVVIVAFTAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQANSLKVGK
Ga0209300_10025555F006623AGGTGGMNLQNFRLEPNPNSPGDWIVFGDIYDNEGNLLGTFGPDGTSVFGWWVTQDVAFQQNYSNQFAVIMAQEIVAGTAE
Ga0209300_10025558F097201GAGGVIKMSVSLKKVRLDSYQRNLGRLSMAVGKAAADVQGEASRSIAMNSGKYREYYGRVEHPHWSSPPGTPPNSDSGILANSIMPQRVNATTYLVVVNAKYGVPLELGWMSKAGNHVPARPFLRPAVEYVAPSFQAAVKSILKGNN
Ga0209300_10025559F007170AGGMAFEPAVIEQWIYDTLTGDATLMGLLAPDNRPNGFQMGIYNTIAPQIDPISRKQPTTPYVVFDRAGNAGQDQDTLCGSRVFTYPTYRITVWDTASGAVSMASSATIMSRIDTLLDNVHVSSTTPRFYCRRESTAQTFGLESGGRTDFGVTAVYRMVTQQ

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