Scaffold Ga0209300

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1002555 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027365 Open in IMG/M

Scaffold ID

Ga0209300_1002555 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6669
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6669

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F007170	Metagenome / Metatranscriptome	356	N
F078722	Metagenome	116	N
F097201	Metagenome / Metatranscriptome	104	N
F101022	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10025551	F101022	N/A	LEDGTGDPTLMWVDQGPINTERYDVRTATRQAWMIKASRCASDIDAKEGTSDVKLSQLKAHCLSMAERYRPLVFA
Ga0209300_10025553	F078722	GGAG	MSASEWTAIGIFVAGLVVSLLVYIVQFLHKMDKRNAVDSVTVKDHGHRLVKLEGDTGELKTRVTHLEANR
Ga0209300_10025554	F001733	GGAGG	MNSISIKRLVVVVIVAFTAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQANSLKVGK
Ga0209300_10025555	F006623	AGGTGG	MNLQNFRLEPNPNSPGDWIVFGDIYDNEGNLLGTFGPDGTSVFGWWVTQDVAFQQNYSNQFAVIMAQEIVAGTAE
Ga0209300_10025558	F097201	GAGG	VIKMSVSLKKVRLDSYQRNLGRLSMAVGKAAADVQGEASRSIAMNSGKYREYYGRVEHPHWSSPPGTPPNSDSGILANSIMPQRVNATTYLVVVNAKYGVPLELGWMSKAGNHVPARPFLRPAVEYVAPSFQAAVKSILKGNN
Ga0209300_10025559	F007170	AGG	MAFEPAVIEQWIYDTLTGDATLMGLLAPDNRPNGFQMGIYNTIAPQIDPISRKQPTTPYVVFDRAGNAGQDQDTLCGSRVFTYPTYRITVWDTASGAVSMASSATIMSRIDTLLDNVHVSSTTPRFYCRRESTAQTFGLESGGRTDFGVTAVYRMVTQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209300_1002555

Overview

Ecosystem & Geography

Associated Families

Sequences