Basic Information | |
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Taxon OID | 3300027365 Open in IMG/M |
Scaffold ID | Ga0209300_1002555 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6669 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001733 | Metagenome / Metatranscriptome | 644 | Y |
F006623 | Metagenome / Metatranscriptome | 368 | Y |
F007170 | Metagenome / Metatranscriptome | 356 | N |
F078722 | Metagenome | 116 | N |
F097201 | Metagenome / Metatranscriptome | 104 | N |
F101022 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209300_10025551 | F101022 | N/A | LEDGTGDPTLMWVDQGPINTERYDVRTATRQAWMIKASRCASDIDAKEGTSDVKLSQLKAHCLSMAERYRPLVFA |
Ga0209300_10025553 | F078722 | GGAG | MSASEWTAIGIFVAGLVVSLLVYIVQFLHKMDKRNAVDSVTVKDHGHRLVKLEGDTGELKTRVTHLEANR |
Ga0209300_10025554 | F001733 | GGAGG | MNSISIKRLVVVVIVAFTAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQANSLKVGK |
Ga0209300_10025555 | F006623 | AGGTGG | MNLQNFRLEPNPNSPGDWIVFGDIYDNEGNLLGTFGPDGTSVFGWWVTQDVAFQQNYSNQFAVIMAQEIVAGTAE |
Ga0209300_10025558 | F097201 | GAGG | VIKMSVSLKKVRLDSYQRNLGRLSMAVGKAAADVQGEASRSIAMNSGKYREYYGRVEHPHWSSPPGTPPNSDSGILANSIMPQRVNATTYLVVVNAKYGVPLELGWMSKAGNHVPARPFLRPAVEYVAPSFQAAVKSILKGNN |
Ga0209300_10025559 | F007170 | AGG | MAFEPAVIEQWIYDTLTGDATLMGLLAPDNRPNGFQMGIYNTIAPQIDPISRKQPTTPYVVFDRAGNAGQDQDTLCGSRVFTYPTYRITVWDTASGAVSMASSATIMSRIDTLLDNVHVSSTTPRFYCRRESTAQTFGLESGGRTDFGVTAVYRMVTQQ |
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