NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1034613

Scaffold Ga0209300_1034613


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1034613 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008489Metagenome / Metatranscriptome332Y
F021287Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209300_10346131F021287N/AMPNLTLITLTPPSLPIGYCPSNYQQLANDVISGTQANFNSAIGNSFFNYGPTTPTLNNQVYPWLDENGNWWVFQGGYWSRENPVAANSSERRIFVGTSADVLSYDGGDGTVYSGNPYAGSMWAIDTNFEARFPVGAGTFAASGVVSVNGTTTSTAVAGEDKHTLVTAEMPSHTHQILDQYINL
Ga0209300_10346132F008489N/AIDQLEGDVSFSVTYRPDQYPGWIEWIDFSECATTTQCLDLCPITNFKPQYRPKMRFPTPSDLPCNETISTPARNLYEVQVMLNIIGYCRIKSLRVHAYDVQEPSVGECRTVYPACTPLDVCDINPLTYTSEAVNP
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