NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208801_1065511

Scaffold Ga0208801_1065511


Overview

Basic Information
Taxon OID3300027367 Open in IMG/M
Scaffold IDGa0208801_1065511 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1370B-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0208801_10655111F027536N/AVSKVVPIDRVLNECRRRADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF
Ga0208801_10655112F015102N/AMQVESEDGENPNTPFDDVTHWVGNLPRKDTDSDEHTNKRNTRGKTKSNFLRKKLGLEEKQ

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