NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000016

Scaffold Ga0209010_1000016


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000016 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109760
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (85.71%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000065Metagenome / Metatranscriptome2788Y
F001021Metagenome / Metatranscriptome804Y
F001567Metagenome / Metatranscriptome670Y
F001851Metagenome / Metatranscriptome626Y
F003669Metagenome / Metatranscriptome474Y
F013120Metagenome / Metatranscriptome274Y
F022717Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100001610F022717GGAGMENTIMSVVGCLILCASLFSQEQPRELRGGGHLLGETAGQFFSEGFVGDMLRACQGKDWKSVSQLSKNVGNVSKTNAKDYCAKEMLAKQQATSGTRLEYDGRGDEETMRADTFIFDGGHLVKIDMIYVAPRANIEGYRPKSFGELFAGLREAYGPPSKSYSEPVLNAYGVKYDAHRAVWMGNQDVISIIEQPGEDGRTEIIAETLAEYNRAAQAPKTANPLR
Ga0209010_100001618F000065AGGAMSHVTKTIPKLRKAPQPPLSYPGATPDADRAKKPALSEPSATDQELNPGDRVEGLGNFGKPTGEFGTVERANEEDAIVKWDDDGRMRLHQPSLKKV
Ga0209010_100001625F003669AGGAGGMCPFCLATMGFVVAGAVSTGVLAALAVKVSRKRNGAEEIISNLNNKEK
Ga0209010_100001629F001851AGGAGMNLTSFSFGLLIVLFTILLLRRMHNLKPRIAGYGSQRMCPSCGLITSRLKPCCLECGKSLTSVTVTPILEK
Ga0209010_100001630F000042AGAAGGMKNTKFVVKLSRGATRAPEFVLRIDRTPIQMTTNRKLALVMGKFAAEDTINSLQNSRRTPELIAVQVECGQLAV
Ga0209010_100001631F013120GGAGGMEYFRFDHPPDRLILCDRSNCETIADYLEINEHGREDFVCAAHTSSERHASVLPKGVPNGERHGSRTTP
Ga0209010_100001659F001567AGGMERSLIWIESDANGWACSNCRWKFPVPTLLSGEEAKGAYDRLAAAKFRQHICESATSLTATLEAKRDANTAFAERARTLIKRGYKPKVAVELVLQETEIEHGNDPRMMEKARADADDFLQRVRKGLI
Ga0209010_100001670F001021AGGAGMKKAIVGTVLSVFLSFAAGIAVADRVHDWHDLEDVHNHVLEAIHEMESARAANHYDMAGHGAKAEEDLRRAEHELHDAIDSARMAR
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