NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208432_1014602

Scaffold Ga0208432_1014602


Overview

Basic Information
Taxon OID3300027380 Open in IMG/M
Scaffold IDGa0208432_1014602 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071173Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208432_10146022F071173N/APNVKGNDTKLDFEFYRLPVELSGFNILQSGVDVDGDPVYSYFVTYKSTIPQDVSGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDASGNYTFLSKVSDSMIKVDVSSGQTKEYINSLISDDISGYSINDTISIAYKKADNNLSKIRVKFYSSDLAYYYVDFTPLSGTGDRIQTLTLNNLFSNYTAAPNLPDPSSIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKAGRPVDIEYKLQLDF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.