NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209867_1012959

Scaffold Ga0209867_1012959


Overview

Basic Information
Taxon OID3300027393 Open in IMG/M
Scaffold IDGa0209867_1012959 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001150Metagenome764N
F016261Metagenome / Metatranscriptome248N

Sequences

Protein IDFamilyRBSSequence
Ga0209867_10129592F001150AGGTGGVLTKHERHRMRVAMVESQASANAKWTPQQQMQVDTAIRKMARMLPRFTADQVWYELGASFPVTKGMTARLLVAQRNGVIKNTGEITFAERGGEHDHAQRLTIWQSL
Ga0209867_10129593F016261AGGMTENIDPKTDPQFKALKHVIEQITQNKVPIRQPWELAARSTLRAIQHEIDDRNVLDDADLIDVLNQTRIEIKYLLSIITDLDERVKERDAEVSRLERWAHRAN
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