Scaffold Ga0255146

Basic Information
Taxon OID	3300027396 Open in IMG/M
Scaffold ID	Ga0255146_1007432 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027396 Open in IMG/M

Scaffold ID

Ga0255146_1007432 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2311
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2311

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F009320	Metagenome / Metatranscriptome	319	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0255146_10074321	F004695	AGGA	MLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPQGKVNFEFERIHENDEYGARQAMKMALHFINSKNDSYSIIRDWAQDALLHKTGVVMVSPVRNPITQYKEVEGTRDQLRSFEIMAAEKGLVAKRQQMRRIDVNLEGVAQEAMMDETGSPVEPTGEEVADAIKANTIYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPGIRNQDFCGFYDPMTIHEAKAQFPYIDIEKFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMITTAWLKRDIDNDGEEETIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFVDAEEIQRGVSALFILDRKFDPAKHVYEFAPMQGNLAYVQDAMERFDQDTSRMLGMTNPSDTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAVGLKDLIYIVWKTMIQYSDDYNIQQLAEAMLPGSGGFLDAKSMENFEFIDRNMINVDLALGFLSDENRLTRQQLITQAQQQFAGILMQLDPSVPEMFAKARRPFEDTLYALGVKHCDSYLPTFEEAIKMFQAKQ
Ga0255146_10074322	F009320	N/A	IPGAILNPPNDQGKVTNHKAYGINIMRMGMERGTFMINESCTKFLEEARNYAIDDLGRFSDPDDHIDSARIGVLALIQGHGESVVSRANSFAAKRFAPIEGKVQRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255146_1007432

Overview

Ecosystem & Geography

Associated Families

Sequences