NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255146_1025938

Scaffold Ga0255146_1025938


Overview

Basic Information
Taxon OID3300027396 Open in IMG/M
Scaffold IDGa0255146_1025938 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005054Metagenome / Metatranscriptome413Y
F033712Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0255146_10259381F033712AGGTGGMFDLIDSVLSMQLDVYRQTEIQDADTGAIKREWNYHRTLDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLTMREKVTNVRDAAGNVIWAESNF
Ga0255146_10259382F005054N/AHQVFWNGDITSADAPPSVKLFDVTSDPAISPLINPTTILVTLQSVADENNPGTYVVYIPYAYTNRNRTLRLQWDYQVSGTNVSRSDEAYVVTPYVDFNHVQDLGFSTDSSDPNYKSYKELIRAERYARKQIEQYTGQKFHLYDDLYVVYGYGSDVLPLPAKINELHELYANDTLLLDNIDKISNISYEVIIAESGYGIRIDRSSIVDNTVYVANGMIPPSIYDISGAFQTNVPYKVQGRFGWEKVPDAVELAAIELMKDYFAKDTVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLDDYVMVSKVEII
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