NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208637_1016119

Scaffold Ga0208637_1016119


Overview

Basic Information
Taxon OID3300027401 Open in IMG/M
Scaffold IDGa0208637_1016119 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002508Metagenome / Metatranscriptome553Y
F030539Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0208637_10161191F030539N/AEYFFETGNLAHTAENKTNEPLRILFVEMLPKNWSAPTIIPPSAQ
Ga0208637_10161192F002508AGGAMPMSNDDDKPHIYTRWRNSEVSRNFHRLGLLVAAIIVMAGLLLMAKDALGLRLWDLIPADIPILAGGIAIGLTGIGLVSLAAYGIVRAVGWAIDKSV

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