Basic Information | |
---|---|
Taxon OID | 3300027406 Open in IMG/M |
Scaffold ID | Ga0208965_1002253 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7867 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (36.36%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005010 | Metagenome | 415 | Y |
F016811 | Metagenome / Metatranscriptome | 244 | Y |
F031255 | Metagenome / Metatranscriptome | 183 | N |
F050369 | Metagenome / Metatranscriptome | 145 | N |
F077286 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208965_100225313 | F050369 | N/A | MKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYSNSLSANEKNLEVRNESEVTYGDGDDEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALMECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEEKYGKKEADGKYVSPSRSKLQIAIQLEPVRKDETRERNYSKAMSFVNTPPKV |
Ga0208965_100225320 | F005010 | N/A | MMRKRRHIREIQKYLEMLMIDQVNITLHASRFGWSEDIQNQLTNSALLIRKYQRRLRLIK |
Ga0208965_100225321 | F016811 | N/A | MSDEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFHITEEFYRKEISNSFSHKEEDYSKEFGE |
Ga0208965_10022538 | F031255 | AGAAG | MVKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGVSNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE |
Ga0208965_10022539 | F077286 | GAG | MSKLTYTVEWEGDVANYKQDFETIEEARMAMIMHHKRNAVMKVGILKED |
⦗Top⦘ |