Scaffold Ga0208950_1021952

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208950_1021952

Scaffold Ga0208950_1021952

Overview

Basic Information
Taxon OID	3300027413 Open in IMG/M
Scaffold ID	Ga0208950_1021952 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1846
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007985	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208950_10219522	F007985	GAGG	MQQQQYKVNNKIFDSIESAGEYMLTLKRSTTLELYTPPSATSVKLNVVRNILIREMLEWAGSFVHSMAPSTEPCWMYSVEDANGFSDAGDTWYEDLEEVTYGNNLMWEDAKHDYESAVQNFDCLFGDYNSVDTVEKLSEMLNTMYHTMSDHSSETDDYIGEVRDSIEKMCASNPNIAHSYDHPRRRTTISFSGNVDAMYKAYMLERNS

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