NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207994_1116783

Scaffold Ga0207994_1116783


Overview

Basic Information
Taxon OID3300027416 Open in IMG/M
Scaffold IDGa0207994_1116783 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055546Metagenome / Metatranscriptome138Y
F069496Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0207994_11167831F069496N/AMESYHKRKKLLEEKYGRLINVKPFNDDGMGIADNTIASHQQQKIVKQLQDISDEEGLNRAYDTKYGLYQHYNKLFIAGTKDPIDFVDDLK
Ga0207994_11167832F055546N/AKLIAELPEKREKIKAQIEFRNDILESQKRVNYKNEFDRLQGAKKLPGLDANAKSRMKELQKKAKQSLNCTPSHRTYSAKF

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