Basic Information | |
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Taxon OID | 3300027455 Open in IMG/M |
Scaffold ID | Ga0207504_104895 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G06K3-12 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 505 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.4 | Long. (o) | -85.37 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F022944 | Metagenome / Metatranscriptome | 212 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207504_1048951 | F022944 | N/A | KIVVILVGSSVLALATSRAQDAKFAADSLKYSHDSYAKVHLVAIANLDFGDGGTVEFKYDRYPNGGPERIQAGNGEEFAWKDGKTWLKSTGCGDTGKPVDAQTAKRLNNWVSLIDGRLNGEPVSNDASEGATVLKFIGKEDKGDREEVVFEESKEKPKAGAYPRLTLR |
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