Basic Information | |
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Taxon OID | 3300027468 Open in IMG/M |
Scaffold ID | Ga0209247_1001418 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3102 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012868 | Metagenome / Metatranscriptome | 276 | Y |
F064668 | Metagenome / Metatranscriptome | 128 | N |
F100345 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209247_10014181 | F012868 | GAG | MKHYDYEWDLNPGGIILDPELNIDKLGWRHGDMFKVTNIDGRAMLVKLDPLV |
Ga0209247_10014184 | F064668 | AGTAG | MNITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGGFFTALLANDFFAAIQSSHPANTVEALKCLVGWINDCMPPEAYSTYNRVSEWCRLPEGHRRAILEQYGLIHTEQEEIMLTLRSESTVEPVLY |
Ga0209247_10014185 | F100345 | AGGAG | MSEHQRLVALLKGPDWYAHESGKDLLAVLNQGKRKRYKSMNSTADKHLSTIMYLFDKEQSVRILKTWLSTYSLPLDPDRLKTFDQFHEQFGKFITNNAGLIKSY |
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