NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255086_1000807

Scaffold Ga0255086_1000807


Overview

Basic Information
Taxon OID3300027486 Open in IMG/M
Scaffold IDGa0255086_1000807 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9229
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F043291Metagenome156N
F083939Metagenome / Metatranscriptome112N
F095171Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0255086_100080710F083939GGAGMDANYIINSVKQTSETLYREPQIDQTERLLYRIQMLEGHIRVLVNHIDNARDEIKTLQTELIAKDSK
Ga0255086_100080711F095171GAGGMLNRTKFPRTFTEAFPNSLENGACIEIHVAQLTIADKVVRVVSLIGLIVLALDCFIWRP
Ga0255086_100080712F043291AGGAMKNLAYTTEVHSIDYGYLTVEFDYFESDDSVGLSEVYDWFAYTVEAFEDEPAGTEVTYELTAADQASIYAQIKKHHIAMIEDFHA
Ga0255086_10008076F002764GAGGLNPEDEAFEELSRRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRGMKK
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