Scaffold Ga0208199_1000073

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208199_1000073

Scaffold Ga0208199_1000073

Overview

Basic Information
Taxon OID	3300027497 Open in IMG/M
Scaffold ID	Ga0208199_1000073 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	39849
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (73.68%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104586	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208199_100007324	F104586	GGA	MKVTLYNCVGSSGGPIQSTFCISSIHRYFTPGRNLALACFLLTHQLPGASHATPNSSPIRVASDFPGADVGEQINAAYADLPEQGGQITLTAGGSFSKPIVFGTNNKPVLLIGVPGDVVNLIYTGTIGTAITFDYGTGHRMGHGLRDVTLTGPGDATDTVGVRFGGSNGAEGITFRDFKIQSFGRNLEMGSHTWLAYFEHGLIRNGGVNVLLPAGLAQAGEQIVFNHVTFADAPPPHLNSVWIQGGGQEVIFRDCSFDQAQLRIGDGGQAAAQVVVSGSHFENSNYMLAGSVNYDYVTVDNHSGNLLRITDSYFLQDAPSNGPSRFLMVNGGTVFLCGVGMYTPAGSPMQHFATLAKTATIDAYGFSDLSGYITGSPFGY

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