NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1001129

Scaffold Ga0208788_1001129


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1001129 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13052
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013514Metagenome / Metatranscriptome270Y
F072285Metagenome / Metatranscriptome121Y
F076129Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208788_100112918F072285N/AMKYPQSVNKSIFIREVYEDTYKNPYDYIVDTMIWENRVDELHTIWCKGNDPQKVNK
Ga0208788_100112922F076129AGGTGGMKNPNPECSREDCRFAYGGGSVTLAYYPPVYDKNGVNINPDRNTTTVNIDCTTCGRMWVGKTCVGETTYEEVK
Ga0208788_100112926F013514GAGMLCLWVEQKYFLRFMLTIEELQKYLDDHNITFEEWMRKNMITDEDRKYFDKIWMDVIYRNFGEDT
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