Scaffold Ga0208788

Basic Information
Taxon OID	3300027499 Open in IMG/M
Scaffold ID	Ga0208788_1001504 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027499 Open in IMG/M

Scaffold ID

Ga0208788_1001504 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11270
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (35.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11270

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (35.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F006503	Metagenome / Metatranscriptome	371	N
F007111	Metagenome / Metatranscriptome	357	N
F021095	Metagenome	220	N
F025272	Metagenome / Metatranscriptome	202	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_100150412	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEDRFKDFFPYTWVMLGFKDFEGMAGLDHIVARDEADNIESHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTRNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0208788_100150414	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYNGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT
Ga0208788_100150418	F007111	GGGGG	METTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPTYDVLVKWVARVIELAKKNLEAANANAGGTLSASIDFGEIELTAKEIVVTVVANPYWKYVDQGVHGRSSSYISARDSKFRYGNKIPPPQAIADWIANKEIAVTPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVEGTKFMSNALSPEMIDILVNTIAETLGKSISVATKL
Ga0208788_100150419	F021095	N/A	MATTVLSGSPQVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPSAFTVYRGGKAWLSINATKFSAVSPNDTYLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFLGNQGLGSVITTFAFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0208788_10015043	F001345	N/A	VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQDQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD
Ga0208788_10015044	F025272	GAG	MDILVFPILISALATLAVVEFRVLPGWFYALPFVKRKPFSCMTCFGFWLGVALTLPTCQWYLAPILGLASSATAIIIREWTFK
Ga0208788_10015045	F006503	GGA	MTNEQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEANQNTINHSLNAPANPEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208788_1001504

Overview

Ecosystem & Geography

Associated Families

Sequences