Scaffold Ga0208788

Basic Information
Taxon OID	3300027499 Open in IMG/M
Scaffold ID	Ga0208788_1003229 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027499 Open in IMG/M

Scaffold ID

Ga0208788_1003229 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7340
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7340

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F079983	Metagenome / Metatranscriptome	115	N
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_100322911	F101045	AGG	LAISLLSRDVTFNVFTELQDYTLINSAIENIPQEIKVRIWPRDLIDKTKLRRQNCEVFFIPCITLSWVQKMRMCARLAREAQEPWFGYAHDDTTISSEDFNKLIEARKTVNENTYWIVTNNPKHPEINADIYALINTKNYWAIGGHDENFHMYYADIDFHLRQAQNGKGQIGVCTPSTTHIGSVVLKKLEGLQSIYYKMMLEKDRSYFKAKHPSFDI
Ga0208788_10032292	F079983	N/A	MPATWDLPRSSGLWNQQDIANYNRLPIWMAIQQTKKMQMWSRWKDMFPKIKWKQNMGDILQGVIAENSPIVNQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFVYIVGNSTAGELPLVNAPAALPTDTSAIKDTAWVAATAAKIGSDENGFLSYRQIQAVASYAKNYLMIPPMEGMQSGAPADNEMSKGKYILVGGSEIYEGLAFDEHVLNTKPLAMNLLNSSFQGAIGPNIVFREEFYPLRFAEDGTMPAPEIELLLPDSGYSTPNATRQTVINPAYASAPIGVAFLIGYNPYEQIDVGPPPSEFTGASINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLIADTVLGIIGNTPRNVIPILYRRQIAPSLFV
Ga0208788_10032296	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKILGAANASGIPQAPAQAELPLEK
Ga0208788_10032297	F063632	GAG	MKSAIEFVGNFFQNNGHLRGALYFSIAALTPMSAAFVEWASQDGPKNWYEVIALILGSIISGLTAIRAYLDNHLSKTKETK
Ga0208788_10032299	F065720	AGGA	MSFLSDLIMKLLRWFYELSQKDTPCEDAKKDDKLKQNLLARIDDHERKLLIESDLRAKRTAAEVSRAGQSPRVDFRLKRPSGVVKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208788_1003229

Overview

Ecosystem & Geography

Associated Families

Sequences