NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1007042

Scaffold Ga0208788_1007042


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1007042 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4460
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F004519Metagenome / Metatranscriptome434Y
F010464Metagenome / Metatranscriptome303N
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208788_10070423F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLQTPSRERIVYPLVFADVQSASTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT
Ga0208788_10070424F001129N/AMPTPILQQMLGQGGTMEFIDGLVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGKSLSAGIVISGRNGGKITAVTPSVGSVIGFTFL
Ga0208788_10070425F060863N/AMLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYDFFVFYSNSWLPFMQRANTDSADAAEVRFINCLEVRMYNLLNA
Ga0208788_10070427F004519N/AMATFRKYAFPKQADADKVLALCTGTTAPVDLGVLDGFICYDILWEGDAPEEATQYETWPEPCGVHSFLGWDEQYTEDYNQHKSL
Ga0208788_10070429F010464AGGVNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEDMEQLVHELQSENAKLKSLS
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