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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027499 Open in IMG/M |
| Scaffold ID | Ga0208788_1009055 Open in IMG/M |
| Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3752 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio | |||||||
| Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208788_10090553 | F006697 | N/A | MANQVQKLSYVDAKLGVGLPGQQTTRVIYDSVNATAGQQFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQILINGATANLAGHLNLNITVGNQVVIKDFDPSFNSTNRGLSFDRLHSGASTGGILELRLLTDIVIPPQVNFKATLQLGSAAIALNDDITIVLKGYGRIFSAGNSF |
| Ga0208788_10090554 | F000710 | N/A | MASNMNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIKFSSTTSAAPATLVNAMQLRVTLTINNDVVIDDVCAHDLGASTGAGVTSGFPNYIPFPRALTGQDTILLRVTNSSGASQLLNVVVFYKNEI |
| Ga0208788_10090555 | F010159 | N/A | MSWQIPTLIEQDIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGAFGAIGDSVAVANGNPIRYTSLMQAFETQQISFYTGTDFYPFIHHVNINSRPFVANVNAVLPDDNITTRISLFNEVDNTPISRQVYITSTNDVTITHGLIINATRASANAIPVTNRTPQGLTYGGSPQVVNTQTNYGSGATPQQFMQPSPKDYQDFAFGLLPANADGQAFATPDSTNGLRDATEYINANFGLGFLNLAGCHYFLNLHYALYTETVPESRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |