NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1042567

Scaffold Ga0208788_1042567


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1042567 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1258
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F025017Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0208788_10425671F002259N/AMGMSAQDKMIHVASRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIAFFVPSAADGIAYTGLNVAGASVKFDLVIGNKTVMKDVSCELGGEQSFYNDGATASSVIDLEGVGILIPPQVEYYVIAKTFNSAARTGLSQRLGCYLFGTGALLNFNTTI
Ga0208788_10425672F006697N/AMANQVSKLAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIVMNSATSNLADHLNLNITVGNQVVLKDFDASFNSNTRGLSFDRLHSGFNDSKNLEVRLLTEIVIPPQVNFKAELQISNALLAADDDVTIILKGYGRIFSAGNSF
Ga0208788_10425673F025017N/AMASNMNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIKFSS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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