NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255582_1011742

Scaffold Ga0255582_1011742


Overview

Basic Information
Taxon OID3300027507 Open in IMG/M
Scaffold IDGa0255582_1011742 Open in IMG/M
Source Dataset NameAPAL treatment+control metatranscriptome co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3038
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePanama: Bocas del Toro
CoordinatesLat. (o)9.1956Long. (o)-82.1254Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004690Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0255582_10117422F004690N/ALQSPSHSDLKVAIISSYPASPRRITVLVNFQAILSLFSGETSSNRNIFFTEDAAKKFFPTSKISAQEVRHQFFLIWSNLTIMAHIMDLRNQSESWKIIILS
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