NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209843_1019883

Scaffold Ga0209843_1019883


Overview

Basic Information
Taxon OID3300027511 Open in IMG/M
Scaffold IDGa0209843_1019883 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080639Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209843_10198832F080639GAGMTDPIDRPHPSQDEVPSQETRGEPLTVPVETQMAVQQLREAGFSEDQQAVLTTALLRVLALWTQQATREDLHAEHQALAQRLAQQLDALHEDTRREIGQHADVVREELRDAFAQHADVLHATRLEPPHRRDVLLWLITALLFLTTVGVALLVVHSVVSP

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