NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208685_1000130

Scaffold Ga0208685_1000130


Overview

Basic Information
Taxon OID3300027513 Open in IMG/M
Scaffold IDGa0208685_1000130 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29463
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.9517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023416Metagenome / Metatranscriptome210N
F024740Metagenome / Metatranscriptome204N

Sequences

Protein IDFamilyRBSSequence
Ga0208685_100013015F023416GAGGMAKVTFILGLSGSGKTHLSEQLEKQTGARRFTSLLADDRDLIVLMDCLKDGKNCIVDEVRFCLSAYRESIVQSLSHVADLEIHWICFENDLETANWNVIHRTNKGDAEGHLNINLRLHPHYTYPANAEVIPIHRI
Ga0208685_100013017F024740GGAGGMKIRSFIFSAVFLVWVTSASAQTMTDITGKQWMASEKAIREIFVLGYVNGLEQLLSSYNFQIRSGVGKDFDAQVLDEAIYKKLIREPELRNGPVREILMSVLNDYAVLTDKVGNSLPAWQKLMSTSECAELMKVLYENQKSKMGF
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