Scaffold Ga0208685_1000395

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208685_1000395

Scaffold Ga0208685_1000395

Overview

Basic Information
Taxon OID	3300027513 Open in IMG/M
Scaffold ID	Ga0208685_1000395 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15408
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (52.38%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.9517	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005347	Metagenome / Metatranscriptome	403	Y
F062537	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208685_100039516	F062537	N/A	MELLLAKPVVVTLAILGAVLSTAASFLQTRNYVSEKTGKALNWAGYGVMGASMLLFVLAGLWR
Ga0208685_10003953	F005347	GGAG	VTVRSLVLGAALALLAPALQADEVSLRLGGKEIELSSALRERMVYFSREALSRCGPNTSRHPGNFGLAALGVEGRWKELLEGSRLRVRFAEPFVSESHLGGTLGVSEALIGLEHKEFFVGPDFTRHGAAIAEHLQCGYLPLLELACLGELQPHLPGRYRETCARLERDAQGRIVMPPPDIAPSCS

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