Scaffold Ga0208338_1000014

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208338_1000014

Scaffold Ga0208338_1000014

Overview

Basic Information
Taxon OID	3300027514 Open in IMG/M
Scaffold ID	Ga0208338_1000014 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	88299
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (67.65%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Browns Valley, California, USA
Coordinates	Lat. (^o)	39.23550963	Long. (^o)	-121.2836963	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024411	Metagenome	206	Y
F033850	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208338_100001413	F024411	AGGAG	MCPICMTNAVLVAAGATSGAGVLGFVAVKVRALRRYRREPRSAIGFKKE
Ga0208338_100001434	F033850	AGGA	MPTNYSLDVAFSSTTRSIPNNSTRPILAMGYGFSEQAPGGSWHEQGQGVLSVRAGSPVVFTAFDTAPGNAQKVTTFEVDFPNKNNPFVDEHGKPIGTPSSIVVTGNNIASQNGQSAGCNVVGLYSMIGPYYINAAIGSKIVCTVKITLRNGQVFQVDPEMQVEGGGIEVGKSTYAT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.