Scaffold Ga0208338_1000036

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208338_1000036

Scaffold Ga0208338_1000036

Overview

Basic Information
Taxon OID	3300027514 Open in IMG/M
Scaffold ID	Ga0208338_1000036 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	64105
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (72.34%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Browns Valley, California, USA
Coordinates	Lat. (^o)	39.23550963	Long. (^o)	-121.2836963	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000621	Metagenome	981	Y
F043565	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208338_100003616	F000621	GAGG	MPTTKHELLDWLMDVPEDAEIGTDGGGLALLAILGTNVHLLEVGRIPNADELYAEAINQAMLERLRRIDAVGGETETGVIIVTLQGYISGLPTLFSTDFNTGFIFKNTKQAETFITEFADELHNPQILDCP
Ga0208338_100003636	F043565	AGAAGG	MIICDFCVLWSQEGTCRIGLNIPKTMKCHGFAPGIEKFCAKPTDFVSLNQITDMARFFGIEKTELKKVKIVAERRVADESCKVS

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