NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1001408

Scaffold Ga0209384_1001408


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1001408 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12603
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008783Metagenome / Metatranscriptome328Y
F010129Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0209384_100140819F008783AGGAMATVQPRHERNDPNAGQQGAYYTVDIAMSAFLDTETINGGRLSPCAANDFATKPTTKAQSLLVSRGQLRYKLMLNNLQIRSNCRIINMVTTYAATAGDSPITDINFGIVFENDDFVPSTGTSADGSTATTTKVLYIQDKISEALYASHTEKMSVFNPSSNIGQIADEEVSVGPVLLVSQDDIVDAITVAEVTGFRGNVDAETPTDNALSYSAE
Ga0209384_10014082F010129GAGVKCDCFYKVKVTQDGKTETYRWGYFPWSWVLKDVKQLYKNGADAVVLEMITQEEFDDGLPKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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