Basic Information | |
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Taxon OID | 3300027535 Open in IMG/M |
Scaffold ID | Ga0209734_1003924 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2609 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000300 | Metagenome / Metatranscriptome | 1340 | Y |
F017355 | Metagenome / Metatranscriptome | 241 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209734_10039242 | F000300 | AGGAG | MVNKLFTLLFASVLVFPLSTAVFAQEAPQEAKAAKPARWEGIVTRVSKDHSTLTVRSVGSSHEKTVQYDSSTKWVSQEHGSKKVNDIDSSQVKDGDRVITEGTWDKDGVLHATVISKRLTRL |
Ga0209734_10039244 | F017355 | AGGAGG | MVRKLFALLFASVLVLGLSTPVFAQEGSKPAEGKDVKQDRVEGVVTRSNKDKSTLVVRNRGTNVERTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGTFDKDGILHATSISKRLTR |
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