NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209163_1000535

Scaffold Ga0209163_1000535


Overview

Basic Information
Taxon OID3300027536 Open in IMG/M
Scaffold IDGa0209163_1000535 Open in IMG/M
Source Dataset NameEnrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67092
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (84.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location NameUSA: New Jersey, Arthur Kill intertidal strait
CoordinatesLat. (o)40.58Long. (o)-74.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054137Metagenome140Y
F063816Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209163_100053510F063816GGAGMESVELKLREIENGEFVVAYTRKIVEILGEPEMSLEVKEGQISEDVSRLVESLGYQIAAKRPMHGWIRLTAVKPHK
Ga0209163_100053554F054137AGGAGGMMYVVRNRYKESLKPADFPKVNKLIDEGIIPAMEKVQGVRSVRAFNGLSGEVILLVEIDELAAIDRALVDEEYGRIAAGMFDYMVRVGGEVWYDRGSWAKCYGRDTTTQGRP

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