NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209163_1001292

Scaffold Ga0209163_1001292


Overview

Basic Information
Taxon OID3300027536 Open in IMG/M
Scaffold IDGa0209163_1001292 Open in IMG/M
Source Dataset NameEnrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29125
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location NameUSA: New Jersey, Arthur Kill intertidal strait
CoordinatesLat. (o)40.58Long. (o)-74.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063816Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209163_10012924F063816GAGMESVELKLRLIDNGEFVVSYTKKIVEMLGEPELSLEVKAGQISEDVSRLIESLGYQIAARKAMDDWIQLKAVKPSK
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