NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209419_1022726

Scaffold Ga0209419_1022726


Overview

Basic Information
Taxon OID3300027537 Open in IMG/M
Scaffold IDGa0209419_1022726 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001584Metagenome / Metatranscriptome668Y
F061989Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209419_10227262F061989AGGMTPLRVAMIAFLAASIQAQPLDVPPSAAQLREWMDDGCVRSGKRVGIDYPGAVERAIRREPAGLAELFRYTVIGELDGEAGEAHAAILFGLLQRWGDRRFAHVLRAQKLGIRKAVIDTIPMPPGSRLQFPLTYASAPH
Ga0209419_10227263F001584N/ADRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSKVTFGFDKDGTMIFPDSLD
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