NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209008_1000369

Scaffold Ga0209008_1000369


Overview

Basic Information
Taxon OID3300027545 Open in IMG/M
Scaffold IDGa0209008_1000369 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16215
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000626Metagenome / Metatranscriptome976Y
F037323Metagenome / Metatranscriptome168Y
F039385Metagenome / Metatranscriptome164Y
F080346Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209008_100036912F080346N/AMDEGRKKLIYRVAGMFLVRRSAGLDRRPARENAFRDAIDNVVERMRRVDARFPAPGK
Ga0209008_100036919F000626AGGAGGMPIVKKAPGIMTREVKLEEPVNELLEDYARFIESNPDHVVNAVLKKVLWRDQDYRKWRAARRTPQPGADKAQPVEVRGRA
Ga0209008_10003693F039385AGGAGGMTNEQTKALAAVRAAFVASETTGLTEAEIGKAAVTGLVLPEVKSGRPPGNYNPIADGPDKQKGKAQHG
Ga0209008_10003699F037323GAGLPVLARFVENGKVSIRLGPVADVKDWLNNYQAFEKTPIVTIDAGSVRLVGTELQFDCGLDDYAA
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