NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208984_1028887

Scaffold Ga0208984_1028887


Overview

Basic Information
Taxon OID3300027546 Open in IMG/M
Scaffold IDGa0208984_1028887 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1150
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010638Metagenome / Metatranscriptome301Y
F021633Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0208984_10288871F010638N/AGQDTTPLLRLQRSKAYLNLETNVVHAQGLNGITYGKGGDVSSYPNSLSCLTVHSDGKYVFEKRDEQTVGKPKVKTAEGTLGADDLQHLKTILDDENLKKLATPKPPDIPNNATIREIESVDAQIDHAGTQQRLTTIKERLKMGASEFGGATNGMDTYLDNAAPFQKTINPLMKWFDGLEKKSKSDFKDSKPQYCAPMNLG
Ga0208984_10288872F021633AGGAMTRPIAFLLALGLTATAGSGQAPTNAPLKIFLNEVQPGVMSAPQYCTLVFADRRFHSEKADIKQGSDTGRKIYEGQLSDSDWNALIAVVDSPGLRDLKVPQTVPPLVMQDTHPYTISIARDKDFQNMEFLDNKSLKPYQSQVKPLLQWWKSFRGQRIPESSTPADPRCALDKTHAIFNQ
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