NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209523_1033428

Scaffold Ga0209523_1033428


Overview

Basic Information
Taxon OID3300027548 Open in IMG/M
Scaffold IDGa0209523_1033428 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1035
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000674Metagenome / Metatranscriptome941Y
F000778Metagenome / Metatranscriptome895Y

Sequences

Protein IDFamilyRBSSequence
Ga0209523_10334281F000674GAGMNLRSSVAVTAMLTAHPTAAQDHRFETDPVVTVRENFVACDVLSQLQRVMDSPRFLLTGECEPLSAGRRVRIYASRGPYVCIYPEDTITPSVPMGHGAEISHSRQ
Ga0209523_10334282F000778N/ASLMSSDRVIVDAIKMAQHLLWQNLPPTRSLPDATTVMRCRDLVRSPAVQSTLERSSNTFPAFALRAVDRVLADQSRTDREIISRLWDVLDDPHLNQALGLPQNSRIAFGPYPKRR
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